The R markdown is available from the pulldown menu for Code at the upper-right, choose “Download Rmd”, or download the Rmd from GitHub.

This vignette will show you how to perform a shortest path calculation using RBGL on a network in Cytoscape. RBGL is a Biocondutor package that offers an array of analytical functions for graphs.

Required Software

The whole point of RCy3 is to connect with Cytoscape. You will need to install and launch Cytoscape:

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